Conduit Ecosystem

Documentation &
guides.

Hosted on GitHub. Opens in a new tab. Stuck? Open an issue on the relevant repository.

conduit-ascent Pipeline

Installation, configuration, and usage guide for the core Snakemake pipeline. Covers every search space strategy, container setup, and HPC deployment.

Open wiki
conduit-summit Visualization

Guide to loading Conduit output files, navigating the Summit interface, and interpreting results — including QC, differential abundance, enrichment, and pathway views.

Open wiki
conduitR R Package

Installation and usage for the R package behind Conduit's statistical layer — loading the conduit object, normalization, differential abundance, and enrichment. Full function reference via help(package = "conduitR").

Read guide
conduit-basecamp Desktop App

Setting up stations, configuring runs, and launching Ascent from the desktop app on macOS, Windows, or Linux.

Read guide