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GUI launcher for configuring and running Conduit Ascent pipelines. No command line required.

The core Snakemake pipeline. Handles database construction, spectral search, quantification, and output in a fully reproducible containerised workflow.

R Shiny app for interactive exploration of Conduit results — protein abundance, community composition, differential expression, and functional annotations.

The R package powering Conduit's statistical layer. Full programmatic access to data structures, normalization, differential abundance testing, and plotting.