Conduit Ecosystem

Open source.
Every component.

All repositories are publicly available on GitHub.

conduit-basecamp Desktop App

GUI launcher for configuring and running Conduit Ascent pipelines. No command line required.

github.com/baynec2/conduit-basecamp
conduit-ascent Pipeline

The core Snakemake pipeline. Handles database construction, spectral search, quantification, and output in a fully reproducible containerised workflow.

github.com/baynec2/conduit-ascent
conduitR R Package

The R package powering Conduit's statistical layer. Full programmatic access to data structures, normalization, differential abundance testing, and plotting.

github.com/baynec2/conduitR
conduit-summit Visualization

R Shiny app for interactive exploration of Conduit results — protein abundance, community composition, differential expression, and functional annotations.

github.com/baynec2/conduit-summit